removed mypy overrides for testcontainers

.gitea/workflows/pull.yaml

@@ -41,6 +41,7 @@ jobs:
           MINIO_ENDPOINT: ${{ vars.MINIO_ENDPOINT }}
           MINIO_ACCESS_KEY: ${{ secrets.MINIO_ACCESS_KEY }}
           MINIO_SECRET_KEY: ${{ secrets.MINIO_SECRET_KEY }}
+          MONGO_ENDPOINT: ${{ vars.MONGO_ENDPOINT }}
         run: |
           poetry run coverage run -m pytest .
       - name: Coverage Report

poetry.lock

@@ -631,33 +631,6 @@ type = "legacy"
 url = "http://192.168.1.2:5001/index"
 reference = "threadripper"
 
-[[package]]
-name = "docker"
-version = "7.1.0"
-description = "A Python library for the Docker Engine API."
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "docker-7.1.0-py3-none-any.whl", hash = "sha256:c96b93b7f0a746f9e77d325bcfb87422a3d8bd4f03136ae8a85b37f1898d5fc0"},
-    {file = "docker-7.1.0.tar.gz", hash = "sha256:ad8c70e6e3f8926cb8a92619b832b4ea5299e2831c14284663184e200546fa6c"},
-]
-
-[package.dependencies]
-pywin32 = {version = ">=304", markers = "sys_platform == \"win32\""}
-requests = ">=2.26.0"
-urllib3 = ">=1.26.0"
-
-[package.extras]
-dev = ["coverage (==7.2.7)", "pytest (==7.4.2)", "pytest-cov (==4.1.0)", "pytest-timeout (==2.1.0)", "ruff (==0.1.8)"]
-docs = ["myst-parser (==0.18.0)", "sphinx (==5.1.1)"]
-ssh = ["paramiko (>=2.4.3)"]
-websockets = ["websocket-client (>=1.3.0)"]
-
-[package.source]
-type = "legacy"
-url = "http://192.168.1.2:5001/index"
-reference = "threadripper"
-
 [[package]]
 name = "filelock"
 version = "3.14.0"
@@ -2243,38 +2216,6 @@ type = "legacy"
 url = "http://192.168.1.2:5001/index"
 reference = "threadripper"
 
-[[package]]
-name = "pywin32"
-version = "308"
-description = "Python for Window Extensions"
-optional = false
-python-versions = "*"
-files = [
-    {file = "pywin32-308-cp310-cp310-win32.whl", hash = "sha256:796ff4426437896550d2981b9c2ac0ffd75238ad9ea2d3bfa67a1abd546d262e"},
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-    {file = "pywin32-308-cp37-cp37m-win_amd64.whl", hash = "sha256:13dcb914ed4347019fbec6697a01a0aec61019c1046c2b905410d197856326a6"},
-    {file = "pywin32-308-cp38-cp38-win32.whl", hash = "sha256:5794e764ebcabf4ff08c555b31bd348c9025929371763b2183172ff4708152f0"},
-    {file = "pywin32-308-cp38-cp38-win_amd64.whl", hash = "sha256:3b92622e29d651c6b783e368ba7d6722b1634b8e70bd376fd7610fe1992e19de"},
-    {file = "pywin32-308-cp39-cp39-win32.whl", hash = "sha256:7873ca4dc60ab3287919881a7d4f88baee4a6e639aa6962de25a98ba6b193341"},
-    {file = "pywin32-308-cp39-cp39-win_amd64.whl", hash = "sha256:71b3322d949b4cc20776436a9c9ba0eeedcbc9c650daa536df63f0ff111bb920"},
-]
-
-[package.source]
-type = "legacy"
-url = "http://192.168.1.2:5001/index"
-reference = "threadripper"
-
 [[package]]
 name = "requests"
 version = "2.32.3"
@@ -2514,63 +2455,6 @@ type = "legacy"
 url = "http://192.168.1.2:5001/index"
 reference = "threadripper"
 
-[[package]]
-name = "testcontainers"
-version = "4.8.2"
-description = "Python library for throwaway instances of anything that can run in a Docker container"
-optional = false
-python-versions = ">=3.9,<4.0"
-files = [
-    {file = "testcontainers-4.8.2-py3-none-any.whl", hash = "sha256:9e19af077cd96e1957c13ee466f1f32905bc6c5bc1bc98643eb18be1a989bfb0"},
-    {file = "testcontainers-4.8.2.tar.gz", hash = "sha256:dd4a6a2ea09e3c3ecd39e180b6548105929d0bb78d665ce9919cb3f8c98f9853"},
-]
-
-[package.dependencies]
-docker = "*"
-typing-extensions = "*"
-urllib3 = "*"
-wrapt = "*"
-
-[package.extras]
-arangodb = ["python-arango (>=7.8,<8.0)"]
-aws = ["boto3", "httpx"]
-azurite = ["azure-storage-blob (>=12.19,<13.0)"]
-chroma = ["chromadb-client"]
-clickhouse = ["clickhouse-driver"]
-cosmosdb = ["azure-cosmos"]
-db2 = ["ibm_db_sa", "sqlalchemy"]
-generic = ["httpx", "redis"]
-google = ["google-cloud-datastore (>=2)", "google-cloud-pubsub (>=2)"]
-influxdb = ["influxdb", "influxdb-client"]
-k3s = ["kubernetes", "pyyaml"]
-keycloak = ["python-keycloak"]
-localstack = ["boto3"]
-mailpit = ["cryptography"]
-minio = ["minio"]
-mongodb = ["pymongo"]
-mssql = ["pymssql", "sqlalchemy"]
-mysql = ["pymysql[rsa]", "sqlalchemy"]
-nats = ["nats-py"]
-neo4j = ["neo4j"]
-opensearch = ["opensearch-py"]
-oracle = ["oracledb", "sqlalchemy"]
-oracle-free = ["oracledb", "sqlalchemy"]
-qdrant = ["qdrant-client"]
-rabbitmq = ["pika"]
-redis = ["redis"]
-registry = ["bcrypt"]
-scylla = ["cassandra-driver (==3.29.1)"]
-selenium = ["selenium"]
-sftp = ["cryptography"]
-test-module-import = ["httpx"]
-trino = ["trino"]
-weaviate = ["weaviate-client (>=4.5.4,<5.0.0)"]
-
-[package.source]
-type = "legacy"
-url = "http://192.168.1.2:5001/index"
-reference = "threadripper"
-
 [[package]]
 name = "torch"
 version = "2.2.2"
@@ -2948,90 +2832,6 @@ type = "legacy"
 url = "http://192.168.1.2:5001/index"
 reference = "threadripper"
 
-[[package]]
-name = "wrapt"
-version = "1.16.0"
-description = "Module for decorators, wrappers and monkey patching."
-optional = false
-python-versions = ">=3.6"
-files = [
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-    {file = "wrapt-1.16.0-py3-none-any.whl", hash = "sha256:6906c4100a8fcbf2fa735f6059214bb13b97f75b1a61777fcf6432121ef12ef1"},
-    {file = "wrapt-1.16.0.tar.gz", hash = "sha256:5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d"},
-]
-
-[package.source]
-type = "legacy"
-url = "http://192.168.1.2:5001/index"
-reference = "threadripper"
-
 [[package]]
 name = "wsproto"
 version = "1.2.0"
@@ -3074,4 +2874,4 @@ reference = "threadripper"
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.12"
-content-hash = "539b697eb7c6ea07594c923ca2aaf26ea841be843c18e696882ccd5dc83339f7"
+content-hash = "23d91d2fd9f9cbd10b2b9e9effcc7a062c35f592771942ccb77553916a7c7546"

pyproject.toml

@@ -22,7 +22,6 @@ flake8-pyproject = "^1.2.3"
 pandas-stubs = "^2.2.2.240603"
 types-tqdm = "^4.66.0.20240417"
 pytest = "^8.3.3"
-testcontainers = "^4.8.2"
 coverage = "^7.6.4"
 pytest-cov = "^6.0.0"
 
@@ -121,7 +120,3 @@ ignore_missing_imports = true
 [[tool.mypy.overrides]]
 module = "shared.docstore.*"
 ignore_missing_imports = true
-
-[[tool.mypy.overrides]]
-module = "testcontainers.*"
-ignore_missing_imports = true

shared/repositories/tests/integration/conftest.py

@@ -10,8 +10,6 @@ import minio
 import pytest
 from PIL import Image
 from pymongo import MongoClient
-from testcontainers.minio import MinioContainer
-from testcontainers.mongodb import MongoDbContainer
 
 from model.src.models import VisualCommunicationModel
 from shared.repositories import (
@@ -48,58 +46,24 @@ env_var_map = {
     'MINIO_OBJECT_NAME': 'test-object',
     'MINIO_IMAGE_NAME': 'test-image',
     'MONGO_ENDPOINT': (
-        f'mongodb://{MONGO_USERNAME}:{MONGO_PASSWORD}' f'@localhost:{MONGO_PORT}/'
+        f'mongodb://{MONGO_USERNAME}:{MONGO_PASSWORD}@localhost:{MONGO_PORT}/'
     ),  # updated when container is running
     'MONGO_DB': 'test-db',
     'MONGO_COLLECTION': 'test-collection',
 }
-container_map = {
-    'minio': MinioContainer(
-        port=MINIO_PORT,
-        access_key=MINIO_ACCESS_KEY,
-        secret_key=MINIO_SECRET_KEY,
-    ),
-    'mongo': MongoDbContainer(
-        port=MONGO_PORT,
-        username=MONGO_USERNAME,
-        password=MONGO_PASSWORD,
-        dbname=env_var_map['MONGO_DB'],
-    ),
-}
-
-
-@pytest.fixture(scope='session', autouse=True)
-def setup_infrastructure(request: pytest.FixtureRequest) -> None:
-    """Prepare infrastructure for integration test."""
-    # prepare infrastructure
-    for container in container_map.values():
-        container.start()
-    # update env var map
-    minio_host = container_map['minio'].get_container_host_ip()
-    minio_port = container_map['minio'].get_exposed_port(MINIO_PORT)
-    env_var_map['MINIO_ENDPOINT'] = f'{minio_host}:{minio_port}'
-    mongo_host = container_map['mongo'].get_container_host_ip()
-    mongo_port = container_map['mongo'].get_exposed_port(MONGO_PORT)
-    env_var_map['MONGO_ENDPOINT'] = (
-        f'mongodb://{MONGO_USERNAME}:{MONGO_PASSWORD}@{mongo_host}:{mongo_port}/'
-    )
-
-    # ensure cleanup
-    def cleanup_infrastructure():
-        for container in container_map.values():
-            container.stop()
-
-    request.addfinalizer(cleanup_infrastructure)
 
 
 @pytest.fixture(scope='session', autouse=True)
 def populate_env(
     request: pytest.FixtureRequest,
-    setup_infrastructure,
 ) -> None:
     """Populate environment with variables used for testing."""
     # update env
     for key, val in env_var_map.items():
+        # skip if already set by CI pipeline
+        if key in os.environ:
+            continue
+        # set env var
         os.environ[key] = val
 
     # ensure cleanup
@@ -112,7 +76,6 @@ def populate_env(
 
 @pytest.fixture(scope='session')
 def raw_minio_client(
-    setup_infrastructure,
     populate_env,
 ) -> Iterator[minio.Minio]:
     """Raw Minio client fixture."""
@@ -145,7 +108,6 @@ def raw_minio_client(
 
 @pytest.fixture
 def minio_client(
-    setup_infrastructure,
     populate_env,
 ) -> Iterator[MinioImplementation]:
     """MinioImplementation fixture."""
@@ -247,7 +209,6 @@ def image_data_in_minio(
 
 @pytest.fixture(scope='session')
 def image_repo(
-    setup_infrastructure,
     populate_env,
 ) -> Iterator[ImageRepository]:
     """Image repository fixture."""
@@ -308,7 +269,6 @@ def model_data_in_minio(
 
 @pytest.fixture(scope='session')
 def model_repo(
-    setup_infrastructure,
     populate_env,
 ) -> Iterator[ModelRepository]:
     """Model repository fixture."""
@@ -320,7 +280,6 @@ def model_repo(
 
 @pytest.fixture
 def raw_mongo_client(
-    setup_infrastructure,
     populate_env,
 ) -> Iterator[MongoClient]:
     """Raw mongo client fixture."""
@@ -338,7 +297,6 @@ def raw_mongo_client(
 
 @pytest.fixture
 def mongo_client(
-    setup_infrastructure,
     populate_env,
 ) -> Iterator[MongoImplementation]:
     """MongoImplementation fixture."""
@@ -434,7 +392,6 @@ def visual_communication_data_in_mongo(
 
 @pytest.fixture(scope='session')
 def visual_communication_repo(
-    setup_infrastructure,
     populate_env,
 ) -> Iterator[VisualCommunicationRepository]:
     """Visual communication repository fixture."""